![]() ![]() This basically allows me to align ALL inputs, rather than all inputs of a compound. I looked into using the cytoscape.js-cola layout with the following options: layout: ). I haven't found a layout that fully supports positioning nodes within the compound. Cytoscape, software for visualising biological networks. I hope it explains what I would like to end up with.įirst, I already saw this question, but as far as I understood it's for manual positioning, rather than layouts. Force-directed graph drawing algorithms are a class of algorithms for drawing graphs in an. I then specified cluster subgraphs containing all recursive components. start ( 20, 0, 10 ) In the above, groups is an array where each group object contains a. Telling cola about the groups is like so: cola. Other elements have no rank and are hence freely positioned. A very simple use of rectangular groups with no nesting. ![]() In dot I tried to add some form of flow within the system ( rankdir=LR ) by positioning the inputs on the left ( rank=source ) and the outputs on the right ( rank=sink ). The cola layout uses a force-directed physics simulation with several sophisticated constraints, written by Tim Dwyer. In my graph I have compound nodes that represent components.Ĭomponents contain other components and/or states, transitions, variables.Įach component can specify inputs and outputs. The Cola.js physics simulation layout for Cytoscape.js. However, I am struggling to find a layout/config that supports what dot calls rank. The Cola.js physics simulation layout for Cytoscape.js (demo, non-animated demo, compound demo, constraint demo) The cola layout uses a force-directed physics simulation with several sophisticated constraints, written by Tim Dwyer. When a graph is first loaded, the user should be presented with a default layout though. I am trying to use cytoscape to replace my dot output and make it interactive (move nodes and compounds, expand/collapse compounds, etc.) ![]()
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